Interface TranscriptionOptions

Configuration options for transcription.

interface TranscriptionOptions {
    forceTranscriptionStartSite?: number;
    maxPromoterSearchDistance?: number;
    minPromoterStrength?: number;
    promoterPattern?: NucleotidePattern;
}

Properties

forceTranscriptionStartSite?: number

Force transcription from a specific position even without promoter

maxPromoterSearchDistance?: number

Maximum distance upstream to search for promoters (default: 1000bp)

minPromoterStrength?: number

Require a minimum promoter strength score (default: 5)

promoterPattern?: NucleotidePattern

Specific promoter pattern to look for (if not provided, will auto-detect)