Interface CleavageSiteOptions

Options for configuring polyadenylation site recognition.

interface CleavageSiteOptions {
    cleavagePreference?: readonly string[];
    distanceRange?: readonly [number, number];
    downstreamDSE?: string;
    polyASignal?: readonly string[];
    upstreamUSE?: string;
}

Properties

cleavagePreference? distanceRange? downstreamDSE? polyASignal? upstreamUSE?

Properties

Optional Readonly cleavagePreference

cleavagePreference?: readonly string[]

Nucleotide preference at cleavage site: A > U > C >> G

Optional Readonly distanceRange

distanceRange?: readonly [number, number]

Distance range from poly-A signal to cleavage site [min, max]

Optional Readonly downstreamDSE

downstreamDSE?: string

Pattern for downstream sequence elements (DSE)

Optional Readonly polyASignal

polyASignal?: readonly string[]

Polyadenylation signals to search for, in order of preference

Optional Readonly upstreamUSE

upstreamUSE?: string

Pattern for upstream sequence elements (USE)

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cleavagePreferencedistanceRangedownstreamDSEpolyASignalupstreamUSE