Function findPotentialSpliceSites

  • findPotentialSpliceSites(sequence, minIntronLength?, maxIntronLength?): GenomicRegion[]

  • Finds potential splice sites in a DNA sequence. Searches for GT (donor) and AG (acceptor) sequences that could form valid introns.

    Parameters

    • sequence: string

      DNA sequence to search

    • minIntronLength: number = MIN_INTRON_LENGTH_FOR_SPLICING

      Minimum intron length (default: 4)

    • maxIntronLength: number = DEFAULT_MAX_INTRON_SEARCH

      Maximum intron length (default: DEFAULT_MAX_INTRON_SEARCH)

    Returns GenomicRegion[]

    Array of potential intron regions with GT-AG splice sites

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