Class SplicingOutcome

constructor

• new SplicingOutcome(variant, matureMRNA, codingSequence, polypeptideLength): SplicingOutcome

• Parameters

  • variant: SpliceVariant
  • matureMRNA: MRNA
  • codingSequence: string
  • polypeptideLength: number

  Returns SplicingOutcome

Readonly codingSequence

Readonly matureMRNA

Readonly polypeptideLength

Readonly variant

getAminoAcidCount

• getAminoAcidCount(): number

• Gets the number of amino acids that would be produced from this variant.

  Returns number

getCodingSequenceLength

• getCodingSequenceLength(): number

• Gets the length of the coding sequence in nucleotides.

  Returns number

getIncludedExons

• getIncludedExons(): readonly number[]

• Gets the exon indices included in this variant.

  Returns readonly number[]

getMRNALength

• getMRNALength(): number

• Gets the length of the mature mRNA in nucleotides.

  Returns number

getVariantDescription

• getVariantDescription(): undefined | string

• Gets the description of this splice variant.

  Returns undefined | string

getVariantName

• getVariantName(): string

• Gets the name of this splice variant.

  Returns string

hasValidReadingFrame

• hasValidReadingFrame(): boolean

• Checks if this variant maintains a proper reading frame.

  Returns boolean