Class SpliceVariantPatterns

Common splice variant patterns for easy creation.

Index

Constructors

Methods

exonSkipping fullLength minimal truncation

Constructors

constructor

new SpliceVariantPatterns(): SpliceVariantPatterns
Returns SpliceVariantPatterns

Methods

`Static` exonSkipping

exonSkipping(name, totalExons, skippedExons, description?): SpliceVariant
Creates an exon skipping variant.
Parameters
- name: string
  Name for the variant
- totalExons: number
  Total number of exons in the gene
- skippedExons: number[]
  Array of 0-based exon indices to skip
- Optional description: string
  Optional description
Returns SpliceVariant
- Defined in src/types/alternative-splicing.ts:161

`Static` fullLength

fullLength(name, totalExons, description?): SpliceVariant
Creates a full-length variant that includes all exons.
Parameters
- name: string
  Name for the variant
- totalExons: number
  Total number of exons in the gene
- Optional description: string
  Optional description
Returns SpliceVariant
- Defined in src/types/alternative-splicing.ts:215

`Static` minimal

minimal(name, essentialExons, description?): SpliceVariant
Creates a minimal variant that includes only specified essential exons.
Parameters
- name: string
  Name for the variant
- essentialExons: number[]
  Array of 0-based essential exon indices
- Optional description: string
  Optional description
Returns SpliceVariant
- Defined in src/types/alternative-splicing.ts:200

`Static` truncation

truncation(name, exonCount, description?): SpliceVariant
Creates a truncation variant that includes only the first N exons.
Parameters
- name: string
  Name for the variant
- exonCount: number
  Number of exons to include from the beginning
- Optional description: string
  Optional description
Returns SpliceVariant
- Defined in src/types/alternative-splicing.ts:184